6CEK
Crystal structure of the D141N variant of catalase-peroxidase from B. pseudomallei
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-15 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 100.896, 113.257, 174.598 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 95.017 - 1.800 |
R-factor | 0.148 |
Rwork | 0.147 |
R-free | 0.17270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDBID 1MWV |
RMSD bond length | 0.015 |
RMSD bond angle | 1.388 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 95.017 | 47.518 | 1.900 |
High resolution limit [Å] | 1.800 | 5.690 | 1.800 |
Rmerge | 0.024 | 0.574 | |
Rmeas | 0.082 | 0.027 | 0.641 |
Rpim | 0.036 | 0.012 | 0.279 |
Total number of observations | 919829 | ||
Number of reflections | 184791 | 6223 | 26730 |
<I/σ(I)> | 15.2 | 26.1 | 1.4 |
Completeness [%] | 99.9 | 99.6 | 100 |
Redundancy | 5 | 4.7 | 5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293 | 20% MPD, 0.1 M sodium citrate, 17% PEG 4000 |