6CDG
GID4 fragment in complex with a peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-24 |
Detector | RIGAKU SATURN A200 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 36.993, 40.651, 56.717 |
Unit cell angles | 90.00, 98.39, 90.00 |
Refinement procedure
Resolution | 32.900 - 1.600 |
R-factor | 0.2114 |
Rwork | 0.209 |
R-free | 0.24830 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | an unpublished nearly isomorphous crystal structure of GID4 |
RMSD bond length | 0.015 |
RMSD bond angle | 1.604 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.650 | 40.650 | 1.630 |
High resolution limit [Å] | 1.600 | 8.770 | 1.600 |
Rmerge | 0.076 | 0.019 | 1.351 |
Rmeas | 0.089 | 0.023 | 1.581 |
Rpim | 0.046 | 0.013 | 0.814 |
Total number of observations | 77760 | 464 | 3667 |
Number of reflections | 21138 | 1008 | |
<I/σ(I)> | 13.1 | 59.7 | 1.1 |
Completeness [%] | 95.4 | 97.7 | 90.5 |
Redundancy | 3.7 | 3.1 | 3.6 |
CC(1/2) | 0.999 | 0.999 | 0.424 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 20% PEG3350, 0.2M sodium bromide |