6CCK
Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with (R)-3-(3-chlorophenyl)-3-((5-methyl-7-oxo-4,7-dihydro-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)amino)propanenitrile
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-24 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1 |
Spacegroup name | I 2 3 |
Unit cell lengths | 135.050, 135.050, 135.050 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.710 - 1.610 |
R-factor | 0.177 |
Rwork | 0.176 |
R-free | 0.19800 |
RMSD bond length | 0.010 |
RMSD bond angle | 0.970 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.11.7) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.710 | 42.710 | 1.690 |
High resolution limit [Å] | 1.610 | 5.080 | 1.610 |
Rmerge | 0.062 | 0.025 | 0.720 |
Rmeas | 0.065 | 0.026 | 0.760 |
Rpim | 0.021 | 0.008 | 0.242 |
Total number of observations | 505615 | ||
Number of reflections | 53106 | 1762 | 7736 |
<I/σ(I)> | 17.4 | ||
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 9.5 | 9.4 | 9.8 |
CC(1/2) | 1.000 | 1.000 | 0.890 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 1.3 M ammonium sulfate, 0.2 M potassium thiocyanate, 0.2 M potassium bromide |