6C45
Crystal structure of human inorganic pyrophosphatase in the P212121 space group
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-22 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0,987 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.250, 136.940, 216.400 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 65.280 - 2.388 |
R-factor | 0.195 |
Rwork | 0.193 |
R-free | 0.25110 |
Structure solution method | SAD |
RMSD bond length | 0.008 |
RMSD bond angle | 1.248 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 84.931 | 84.931 | 2.520 |
High resolution limit [Å] | 2.388 | 7.550 | 2.390 |
Rmerge | 0.056 | 0.687 | |
Rmeas | 0.136 | 0.065 | 0.801 |
Rpim | 0.064 | 0.031 | 0.401 |
Total number of observations | 269611 | 8656 | 35873 |
Number of reflections | 60497 | 2109 | 8687 |
<I/σ(I)> | 8.2 | 16.1 | 2.2 |
Completeness [%] | 99.9 | 98.9 | 99.5 |
Redundancy | 4.5 | 4.1 | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 20% PEG3350, 100 mM Bis-Tris, pH 7.5, 200 mM potassium bromide, 10% v/v glycerol |