6C3S
AMYLOID FORMING PEPTIDE YTIAAL FROM TRANSTHYRETIN
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID13 |
Synchrotron site | ESRF |
Beamline | ID13 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2007-07-13 |
Detector | MARRESEARCH |
Wavelength(s) | 0.895432 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 18.746, 9.578, 44.796 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.398 - 1.602 |
R-factor | 0.2036 |
Rwork | 0.200 |
R-free | 0.24400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Ideal beta strand |
RMSD bond length | 0.007 |
RMSD bond angle | 0.896 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (dev_1555) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 90.000 | 90.000 | 1.720 |
High resolution limit [Å] | 1.600 | 2.740 | 1.600 |
Rmerge | 0.103 | 0.068 | 0.318 |
Total number of observations | 3501 | ||
Number of reflections | 625 | 139 | 112 |
<I/σ(I)> | 9.6 | ||
Completeness [%] | 98.9 | 95.9 | 99.1 |
Redundancy | 5.6 | 5.4 | 5.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 298 | YTIAAL crystals were grown from a solution containing 10mg/mL peptide. The reservoir contained 100mM Bis-Tris pH 5.5 and 3 M sodium chloride. Crystals were soaked on 25% Glycerol, prior to diffraction |