6C0D
Crystal structure of an Amidase (hydantoinase/carbamoylase family) from Burkholderia phymatum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-20 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 136.620, 136.620, 67.510 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.719 - 1.800 |
R-factor | 0.158 |
Rwork | 0.157 |
R-free | 0.17750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5j4mA as per MorDa |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX (1.13rc1_2961) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.719 | 44.719 | 1.850 |
High resolution limit [Å] | 1.800 | 8.050 | 1.800 |
Rmerge | 0.063 | 0.031 | 0.545 |
Rmeas | 0.067 | 0.032 | 0.620 |
Number of reflections | 67274 | 824 | 4947 |
<I/σ(I)> | 17.25 | 48.51 | 2.08 |
Completeness [%] | 100.0 | 99 | 100 |
Redundancy | 7.405 | 10.141 | 4.432 |
CC(1/2) | 0.999 | 0.999 | 0.828 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 290 | Microlytic MCSG-1 screen F11: 200mM Ammonium sulfate, 25% PEG 3350, 100mM HEPES free acid / NaOH pH 7.5: BuphA.12245.b.B1.PW38373 at 22.42mg/ml: cryo: 15% EG in 2 steps: tray 296390 f11: puck jzk7-6. |