6BYM
Crystal structure of the sterol-bound second StART domain of yeast Lam4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-11-08 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.00001 |
Spacegroup name | P 1 |
Unit cell lengths | 38.179, 47.301, 55.996 |
Unit cell angles | 111.21, 101.63, 100.33 |
Refinement procedure
Resolution | 42.381 - 2.200 |
R-factor | 0.1688 |
Rwork | 0.166 |
R-free | 0.22960 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.999 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.280 |
High resolution limit [Å] | 2.200 | 4.740 | 2.200 |
Rmerge | 0.090 | 0.060 | 0.259 |
Rmeas | 0.105 | 0.070 | 0.301 |
Rpim | 0.053 | 0.035 | 0.153 |
Total number of observations | 66375 | ||
Number of reflections | 17147 | 1733 | 1682 |
<I/σ(I)> | 9.6 | ||
Completeness [%] | 98.3 | 99.5 | 97.1 |
Redundancy | 3.9 | 3.9 | 3.8 |
CC(1/2) | 0.995 | 0.952 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293.15 | Lithium Chloride 0.7M 0.1M HEPES pH 7.5 24% PEG6000 |