6BY0
Crystal structure of catalase HPII from E. coli in space group P1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-11 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97946 |
Spacegroup name | P 1 |
Unit cell lengths | 69.337, 90.141, 114.764 |
Unit cell angles | 107.10, 105.60, 95.98 |
Refinement procedure
Resolution | 49.390 - 2.930 |
R-factor | 0.1857 |
Rwork | 0.183 |
R-free | 0.23610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3vu3 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.040 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | AMoRE (SIMBAD) |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.390 | 3.020 |
High resolution limit [Å] | 2.930 | 2.930 |
Rmerge | 0.174 | 0.506 |
Number of reflections | 53296 | 4616 |
<I/σ(I)> | 4.3 | |
Completeness [%] | 98.8 | |
Redundancy | 6 | |
CC(1/2) | 0.986 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | 0.085 M sodium HEPES pH 7.5, 17% w/v PEG 4000, 15% v/v glycerol, 8.5% v/v isopropanol or 0.1 M HEPES pH 7.0, 20% w/v PEG 6000, 1.0 M lithium chloride |