6BXP
Crystal Structure of HLA-B*57:01 with a modified HIV peptide RKV-Kyn
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-09 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.954 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.446, 82.051, 110.434 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.230 - 1.450 |
R-factor | 0.1708 |
Rwork | 0.170 |
R-free | 0.19360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g9d |
RMSD bond length | 0.010 |
RMSD bond angle | 1.090 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.6) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.0) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 27.960 | 27.960 | 1.480 |
High resolution limit [Å] | 1.450 | 7.810 | 1.450 |
Rmerge | 0.077 | 0.044 | 0.611 |
Total number of observations | 1392 | 14923 | |
Number of reflections | 79286 | 387 | 4080 |
<I/σ(I)> | 9 | 19.3 | 2 |
Completeness [%] | 97.3 | 67 | 99 |
Redundancy | 3.7 | 3.6 | 3.7 |
CC(1/2) | 0.997 | 0.992 | 0.716 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 18%PEG4000, 0.2M NH4 Ac, 0.1M NaCitrate |