6BOR
Human APE1 substrate complex with an G/G mismatch adjacent the THF
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-17 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 |
Unit cell lengths | 44.408, 60.204, 73.014 |
Unit cell angles | 82.94, 80.29, 89.10 |
Refinement procedure
Resolution | 24.811 - 1.840 |
R-factor | 0.1715 |
Rwork | 0.170 |
R-free | 0.20920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dff |
RMSD bond length | 0.015 |
RMSD bond angle | 1.448 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 1.880 |
High resolution limit [Å] | 1.840 | 5.010 | 1.850 |
Rmerge | 0.083 | 0.054 | 0.505 |
Rmeas | 0.094 | 0.059 | 0.661 |
Rpim | 0.043 | 0.025 | 0.422 |
Number of reflections | 115113 | 3183 | 3123 |
<I/σ(I)> | 11.7 | ||
Completeness [%] | 99.4 | 100 | 97 |
Redundancy | 4.2 | 5.6 | 2.2 |
CC(1/2) | 0.996 | 0.099 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 291 | 7% PEG 20K, 100mM sodium Citrate, 15% glycerol, 5mM CaCl2 |