6BH3
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR (S)-N-(1-(3-isopropyl-1H-pyrazole-5-carbonyl)pyrrolidin-3-yl)cyclopropanecarboxamide (Compound N55)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-02 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.00000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 116.667, 62.325, 46.872 |
Unit cell angles | 90.00, 92.58, 90.00 |
Refinement procedure
Resolution | 32.969 - 1.701 |
R-factor | 0.1958 |
Rwork | 0.195 |
R-free | 0.21570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5e6h |
RMSD bond length | 0.002 |
RMSD bond angle | 0.490 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (dev_2863) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.980 | 1.760 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.106 | 0.924 |
Rpim | 0.048 | 0.603 |
Number of reflections | 35686 | 2696 |
<I/σ(I)> | 22 | 2 |
Completeness [%] | 96.7 | 73.8 |
Redundancy | 5.3 | 2.4 |
CC(1/2) | 0.568 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 1.2-1.35 M (NH4)2SO4, 0.1 M Tris-HCl (pH 8.6-9.2), 0-20% glycerol, 25 mM (Na/K) dibasic/monobasic phosphate |