6BG7
Crystal structure of G107A mutant of human macrophage migration inhibitory factor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-02 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 95.863, 95.863, 103.712 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.930 - 2.540 |
R-factor | 0.1998 |
Rwork | 0.198 |
R-free | 0.22540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3djh |
RMSD bond length | 0.015 |
RMSD bond angle | 1.684 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.590 |
High resolution limit [Å] | 2.540 | 6.920 | 2.550 |
Rmerge | 0.082 | 0.071 | 0.384 |
Rmeas | 0.099 | 0.086 | 0.476 |
Rpim | 0.054 | 0.048 | 0.274 |
Number of reflections | 15576 | 778 | 754 |
<I/σ(I)> | 8.2 | ||
Completeness [%] | 83.7 | 75.5 | 83 |
Redundancy | 2.6 | 2.4 | 2.4 |
CC(1/2) | 0.976 | 0.812 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 2 M ammonium sulfate, 3% 2-propanol, 0.1 M Tris-HCl, pH 7.5 |