6BED
Crystal structure of VACV D13 in complex with Rifampicin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-03-29 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.00002 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 190.150, 190.150, 257.570 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.990 - 2.750 |
R-factor | 0.212 |
Rwork | 0.210 |
R-free | 0.23700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdbid 3SAM |
RMSD bond length | 0.007 |
RMSD bond angle | 0.960 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | BUSTER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.990 | 19.990 | 2.780 |
High resolution limit [Å] | 2.710 | 12.100 | 2.710 |
Rmerge | 0.224 | 0.035 | 2.396 |
Rmeas | 0.227 | 0.036 | 2.427 |
Total number of observations | 3254317 | ||
Number of reflections | 74019 | 753 | 4861 |
<I/σ(I)> | 23.56 | 95.34 | 2.53 |
Completeness [%] | 98.5 | 75.1 | 89.2 |
Redundancy | 43.966 | 37.817 | 39.693 |
CC(1/2) | 0.999 | 1.000 | 0.758 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.8 | 293 | 3.5-4.0 M sodium formate and 0.1 M citric acid |