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6B9J

Structure of vaccinia virus D8 protein bound to human Fab vv138

Replaces:  5USI
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL7-1
Synchrotron siteSSRL
BeamlineBL7-1
Temperature [K]100
Detector technologyCCD
Collection date2014-03-19
DetectorADSC QUANTUM 315r
Wavelength(s)1.15
Spacegroup nameC 2 2 21
Unit cell lengths234.282, 253.842, 73.760
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution117.140 - 2.900
R-factor0.2426
Rwork0.241
R-free0.26890
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4e9o 1rz7
RMSD bond length0.007
RMSD bond angle1.197
Data reduction softwareHKL-2000
Data scaling softwareSCALA (3.3.20)
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]172.163117.1413.060
High resolution limit [Å]2.9059.1902.900
Rmerge0.0481.433
Rmeas0.1790.0531.559
Rpim0.0710.0210.607
Total number of observations301272995445454
Number of reflections4873116827089
<I/σ(I)>8.324.31.4
Completeness [%]99.49999.8
Redundancy6.25.96.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP529520% PEG 3350, 200mM sodium malonate

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