Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6B8G

Twice-Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-2
Synchrotron siteSSRL
BeamlineBL9-2
Temperature [K]100
Detector technologyPIXEL
Collection date2017-07-22
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameF 4 3 2
Unit cell lengths179.950, 179.950, 179.950
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.631 - 1.130
R-factor0.1036
Rwork0.102
R-free0.12130
RMSD bond length0.014
RMSD bond angle1.370
Data reduction softwareiMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]63.6201.150
High resolution limit [Å]1.1301.130
Rmerge0.1311.131
Number of reflections929124518
<I/σ(I)>19.12.3
Completeness [%]100.0100
Redundancy32.213.8
CC(1/2)0.9990.628
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293Reservoir: 500 uL of 25 mM HEPES pH 7.0 with 10 mM CaCl2 Well: 2 uL of reservoir solution and 2 uL of 2.5 uM ferritin (by 24-mer) in 15 mM TRIS pH 7.4 with 150 mM NaCl After crystals formed, a crystal was harvested and soaked in a buffered solution comprised of 25 mM HEPES pH 7.0, 30 mM CaCl2, 8.6 % (w/v) sodium acrylate, 2.5 % (w/v) acrylamide, and 0.2 % (w/v) Bis-acrylamide overnight. Crystal was transferred to a solution containing 1 % APS and 1% TEMED with 4 M NaCl for 5 min. Crystal was then transferred to a clean slide and soaked in 30 uL H2O for 5 min. The H2O was removed the crystal was soaked in 4 M NaCl for 2 min. The crystal was removed, and soaked in 30 uL H2O for 5 min. This solution was removed and the crystal was soaked in 1 M CaCl2 for 2 min. The crystal was removed, cryoprotected in perfluoro polyether, and frozen in liquid N2.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon