6B83
Crystal structure of Myotoxin II from Bothrops moojeni complexed to Caproic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-25 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.425 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.238, 62.991, 88.106 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.832 - 1.700 |
R-factor | 0.1895 |
Rwork | 0.189 |
R-free | 0.20510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kf3 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.946 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.780 |
High resolution limit [Å] | 1.700 | 3.400 | 1.700 |
Rmerge | 0.051 | 0.040 | 0.396 |
Rmeas | 0.057 | 0.045 | 0.446 |
Rpim | 0.025 | 0.019 | 0.201 |
Number of reflections | 31375 | 3848 | 3872 |
<I/σ(I)> | 17.5 | ||
Completeness [%] | 97.5 | 90.6 | 98.2 |
Redundancy | 4.8 | 5 | 4.6 |
CC(1/2) | 0.998 | 0.912 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | 24% PEG4000, 0.1 M Tris HCl, 0.2 M Lithium Sulfate |