6B81
Crystal structure of Myotoxin II from Bothrops moojeni complexed to Caprylic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-25 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.425 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.061, 61.683, 54.027 |
Unit cell angles | 90.00, 118.93, 90.00 |
Refinement procedure
Resolution | 26.671 - 1.760 |
R-factor | 0.1744 |
Rwork | 0.173 |
R-free | 0.20160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kf3 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.955 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.820 |
High resolution limit [Å] | 1.760 | 3.790 | 1.760 |
Rmerge | 0.107 | 0.058 | 0.557 |
Rmeas | 0.130 | 0.070 | 0.680 |
Rpim | 0.073 | 0.038 | 0.383 |
Number of reflections | 28293 | 2877 | 2942 |
<I/σ(I)> | 7.5 | ||
Completeness [%] | 96.2 | 95.2 | 99.9 |
Redundancy | 3 | 3.1 | 3 |
CC(1/2) | 0.993 | 0.685 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | 32% PEG4000, 0.1 M Tris HCl, 0.25 M Lithium Sulfate |