6B7E
Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with (R)-4-(5-(difluoromethyl)-1H-imidazol-1-yl)-3,3-dimethylisochroman-1-one
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-03-01 |
Detector | Bruker Platinum 135 |
Wavelength(s) | 1.5418 |
Spacegroup name | I 2 3 |
Unit cell lengths | 135.480, 135.480, 135.480 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.294 - 2.104 |
R-factor | 0.1732 |
Rwork | 0.171 |
R-free | 0.20620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jbn |
RMSD bond length | 0.009 |
RMSD bond angle | 0.988 |
Data reduction software | xia2 (1.6) |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHENIX (1.12_2829) |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.210 | 36.210 | 2.160 |
High resolution limit [Å] | 2.100 | 9.410 | 2.100 |
Rmerge | 0.111 | 0.024 | 0.865 |
Rmeas | 0.125 | 0.027 | 0.984 |
Rpim | 0.058 | 0.012 | 0.457 |
Total number of observations | 106196 | ||
Number of reflections | 23975 | 274 | 1757 |
<I/σ(I)> | 10.6 | ||
Completeness [%] | 99.4 | 92.7 | 99.2 |
Redundancy | 4.4 | 4.2 | 4.3 |
CC(1/2) | 0.997 | 0.999 | 0.558 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 1.8 M AMMONIUM SULFATE, 0.25 M POTASSIUM THIOCYANATE, 0.2 M POTASSIUM BROMIDE |