6B4A
Crystal structure of the C-Terminal Domain of Doublecortin (TgDCX) from Toxoplasma gondii ME49
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-08-03 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 36.860, 53.230, 96.380 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.725 - 2.000 |
R-factor | 0.1935 |
Rwork | 0.186 |
R-free | 0.26070 |
Structure solution method | SAD |
RMSD bond length | 0.007 |
RMSD bond angle | 0.784 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX (dev_2499) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.725 | 35.725 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.059 | 0.021 | 0.557 |
Rmeas | 0.064 | 0.023 | 0.645 |
Number of reflections | 13417 | 185 | 980 |
<I/σ(I)> | 17.97 | 55.13 | 2.65 |
Completeness [%] | 99.8 | 95.4 | 99.8 |
Redundancy | 6.112 | 5.449 | 3.916 |
CC(1/2) | 0.999 | 1.000 | 0.842 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289 | Rigaku Reagents PACT screen, optimized condition e6: 24.09% (w/v) PEG 3350, 50 mM sodium formate: TogoA.17199.a.B3.PW38274 at 15 mg/mL: cryo: 20% EG: tray 293956a11: puck utu4-1. For phasing, a crystal from Rigaku Reagents PACT screen condition e6 (18% (w/v) PEG 3350, 200 mM sodium formate) was soaked in reservoir plus 20% 2.5 M NaI in ethylene glycol and vitrified. Anomalous data was collected at the home source. Tray 292844e6: puck hly3-2. |