6AXW
Structure of the I124A mutant of the HIV-1 capsid protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2016-12-20 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.000031 |
Spacegroup name | P 6 |
Unit cell lengths | 92.611, 92.611, 57.954 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 57.950 - 2.400 |
R-factor | 0.1925 |
Rwork | 0.189 |
R-free | 0.23580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xfx |
RMSD bond length | 0.007 |
RMSD bond angle | 1.060 |
Data reduction software | Aimless (0.5.31) |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (REFMAC 5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 57.950 | 57.950 | 2.490 |
High resolution limit [Å] | 2.400 | 8.970 | 2.400 |
Rmerge | 0.113 | 0.055 | 0.750 |
Rmeas | 0.119 | 0.058 | 0.797 |
Rpim | 0.036 | 0.019 | 0.267 |
Total number of observations | 115437 | ||
Number of reflections | 10933 | 233 | 1136 |
<I/σ(I)> | 15.8 | ||
Completeness [%] | 97.2 | 98.7 | 96.8 |
Redundancy | 10.6 | 10.1 | 8.4 |
CC(1/2) | 0.998 | 0.998 | 0.808 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | PEG3350, NaI, MIB, Glycerol |