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6AXS

Structure of the V11I/T58A/P122A mutant of the HIV-1 capsid protein

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 4.2.2
Synchrotron siteALS
Beamline4.2.2
Temperature [K]100
Detector technologyCMOS
Collection date2016-12-19
DetectorRDI CMOS_8M
Wavelength(s)1.000032
Spacegroup nameP 6
Unit cell lengths92.475, 92.475, 57.675
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution36.076 - 2.402
R-factor0.2306
Rwork0.228
R-free0.26590
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)pdbid 4XFX
RMSD bond length0.004
RMSD bond angle0.633
Data reduction softwareAimless (0.5.32)
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER (2.7.17)
Refinement softwarePHENIX (1.11.1-2575_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]36.07657.6802.490
High resolution limit [Å]2.4008.9902.400
Rmerge0.0780.0400.781
Rmeas0.0820.0420.829
Rpim0.0250.0140.270
Total number of observations114114
Number of reflections109172191140
<I/σ(I)>20.7
Completeness [%]98.294.598.1
Redundancy10.59.98.8
CC(1/2)0.9980.9970.815
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP291PEG3350, NaI, Sodium cacodylate, Glycerol

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PDB entries from 2024-05-15

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