6AXR
Structure of the P122A mutant of the HIV-1 capsid protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.033203 |
Spacegroup name | P 6 |
Unit cell lengths | 92.728, 92.728, 57.791 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.907 - 2.300 |
R-factor | 0.2415 |
Rwork | 0.240 |
R-free | 0.26780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xfx |
RMSD bond length | 0.002 |
RMSD bond angle | 0.508 |
Data reduction software | Aimless (0.5.32) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX (1.11.1-2575_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.910 | 46.910 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.060 | 0.046 | 0.633 |
Rmeas | 0.066 | 0.051 | 0.699 |
Rpim | 0.028 | 0.022 | 0.293 |
Number of reflections | 12735 | 241 | 1251 |
<I/σ(I)> | 14.9 | ||
Completeness [%] | 99.9 | 99.3 | 100 |
Redundancy | 5.7 | 5.5 | 5.6 |
CC(1/2) | 0.998 | 0.998 | 0.833 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | PEG3350, NaI, Sodium cacodylate, Glycerol |