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6AXR

Structure of the P122A mutant of the HIV-1 capsid protein

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]100
Detector technologyPIXEL
Collection date2017-03-14
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.033203
Spacegroup nameP 6
Unit cell lengths92.728, 92.728, 57.791
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution46.907 - 2.300
R-factor0.2415
Rwork0.240
R-free0.26780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4xfx
RMSD bond length0.002
RMSD bond angle0.508
Data reduction softwareAimless (0.5.32)
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER (2.7.17)
Refinement softwarePHENIX (1.11.1-2575_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]46.91046.9102.380
High resolution limit [Å]2.3008.9102.300
Rmerge0.0600.0460.633
Rmeas0.0660.0510.699
Rpim0.0280.0220.293
Number of reflections127352411251
<I/σ(I)>14.9
Completeness [%]99.999.3100
Redundancy5.75.55.6
CC(1/2)0.9980.9980.833
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP291PEG3350, NaI, Sodium cacodylate, Glycerol

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PDB entries from 2024-05-15

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