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6AXE

Crystal structure of a malate synthase G from Mycobacterium marinum bound to acetyl CoA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2017-08-07
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97856
Spacegroup nameP 1 21 1
Unit cell lengths78.600, 86.980, 124.130
Unit cell angles90.00, 98.45, 90.00
Refinement procedure
Resolution38.734 - 1.600
R-factor0.1524
Rwork0.152
R-free0.17390
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3s9z
RMSD bond length0.006
RMSD bond angle0.814
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]38.73438.7341.640
High resolution limit [Å]1.6007.1601.600
Rmerge0.0490.0250.452
Rmeas0.0570.0290.540
Total number of observations854923
Number of reflections214046246814154
<I/σ(I)>14.3331.572.09
Completeness [%]98.496.988.1
Redundancy3.9943.9123.013
CC(1/2)0.9990.9980.851
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.5289MymaA.18344.a.B1.PS38275 at 23.7 mg/mL with 2 mM acetyl coenzyme A against JCSG+ screen condition H10 0.2 M ammonium acetate, 0.1 M BisTris pH 5.5, 25% PEG 3350 supplemented with 15% EG as cryo-protectant, crystal tracking ID 292651h10, unique puck ID ltv3-10

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PDB entries from 2024-05-15

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