6AP4
Crystal structure of the DNA polymerase III subunit beta from Acinetobacter baumannii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-09-27 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.71073 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 72.713, 328.597, 147.497 |
Unit cell angles | 90.00, 91.53, 90.00 |
Refinement procedure
Resolution | 164.300 - 2.950 |
R-factor | 0.2503 |
Rwork | 0.248 |
R-free | 0.28670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4k3s |
RMSD bond length | 0.019 |
RMSD bond angle | 2.522 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 164.300 | 50.000 | 3.060 |
High resolution limit [Å] | 2.950 | 6.350 | 2.950 |
Rmerge | 0.115 | 0.047 | 0.602 |
Rmeas | 0.130 | 0.053 | 0.681 |
Rpim | 0.059 | 0.024 | 0.315 |
Total number of observations | 670605 | ||
Number of reflections | 144290 | 14482 | 14388 |
<I/σ(I)> | 8.4 | ||
Completeness [%] | 99.8 | 99.3 | 99.9 |
Redundancy | 4.6 | 4.6 | 4.6 |
CC(1/2) | 0.995 | 0.786 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 294 | 0.1 M Tris-HCl pH 7.6, 0.1 M MgCl2, 7.5%(w/v) PEG 3350, 1% (v/v) DMSO |