6ADX
Crystal structure of the Zika virus NS3 helicase (ADP-Mn2+ complex, form 1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-05-14 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.750, 68.658, 56.929 |
Unit cell angles | 90.00, 92.50, 90.00 |
Refinement procedure
Resolution | 29.390 - 1.752 |
R-factor | 0.1805 |
Rwork | 0.179 |
R-free | 0.21060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vbc |
RMSD bond length | 0.006 |
RMSD bond angle | 0.855 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.810 |
High resolution limit [Å] | 1.750 | 3.770 | 1.750 |
Rmerge | 0.048 | 0.032 | 0.231 |
Rmeas | 0.057 | 0.038 | 0.273 |
Rpim | 0.031 | 0.020 | 0.144 |
Number of reflections | 41025 | 4136 | 4079 |
<I/σ(I)> | 13.1 | ||
Completeness [%] | 98.8 | 97.4 | 98.5 |
Redundancy | 3.5 | 3.4 | 3.5 |
CC(1/2) | 0.997 | 0.942 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 289 | PEG3350, lithium sulfate |