5Z83
Crystal structure of GenB1 from Micromonospora echinospora in complex with PLP (internal aldimine)
Experimental procedure
実験手法 | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-03-15 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1.00003 |
Spacegroup name | P 21 21 21 |
格子定数 [Å] | 77.140, 88.012, 116.140 |
格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
残基 | 33.798 - 1.700 |
R因子 | 0.1591 |
Rwork | 0.158 |
R-free | 0.19230 |
Structure solution method | SAD |
結合長の平均二乗偏差(RMSD) [Å] | 0.012 |
結合角の平均二乗偏差(RMSD) [度] | 1.190 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (dev_2474) |
Quality characteristics
Overall | Outer shell | |
分解能 [Å] (低) | 50.000 | 1.730 |
分解能 [Å] (高) | 1.700 | 1.700 |
Rmerge_l_obs | 0.055 | 0.241 |
Rpim | 0.017 | 0.123 |
独立反射数 | 84747 | 3524 |
<I/σ(I)> | 34 | |
完全性 [%] | 97.2 | |
冗長性 | 9.4 |
結晶化条件
結晶ID | 方法 | pH | 温度 | 溶液条件 |
1 | MICROBATCH | 295 | magnesium formate, PEG3350 |