5YVP
Crystal structure of an apo form cyclase Filc1 from Fischerella sp. TAU
Experimental procedure
実験手法 | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL15A1 |
Synchrotron site | NSRRC |
Beamline | BL15A1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-04 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
格子定数 [Å] | 86.758, 255.893, 34.912 |
格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
残基 | 24.242 - 2.051 |
R因子 | 0.214 |
Rwork | 0.212 |
R-free | 0.25500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yvk |
結合長の平均二乗偏差(RMSD) [Å] | 0.007 |
結合角の平均二乗偏差(RMSD) [度] | 1.109 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Quality characteristics
Overall | Inner shell | Outer shell | |
分解能 [Å] (低) | 25.000 | 25.000 | 2.120 |
分解能 [Å] (高) | 2.050 | 4.410 | 2.050 |
Rmerge_l_obs | 0.073 | 0.052 | 0.400 |
Rmeas | 0.082 | 0.059 | 0.449 |
Rpim | 0.038 | 0.028 | 0.201 |
独立反射数 | 49655 | 5160 | 4856 |
<I/σ(I)> | 15.6 | ||
完全性 [%] | 99.1 | 96.3 | 99.9 |
冗長性 | 4.9 | 4.9 | 4.9 |
CC(1/2) | 0.994 | 0.956 |
結晶化条件
結晶ID | 方法 | pH | 温度 | 溶液条件 |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 295 | 1.0M sodium citrate, 0.1M Imidazole pH 8.0 |