Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ZVG

The crystal structure of NSun6 from Pyrococcus horikoshii with SAM

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyCCD
Collection date2017-07-13
DetectorADSC QUANTUM 315
Wavelength(s)0.9777
Spacegroup nameP 1
Unit cell lengths52.112, 52.983, 83.801
Unit cell angles80.80, 80.75, 67.84
Refinement procedure
Resolution48.781 - 2.500
R-factor0.1819
Rwork0.179
R-free0.23610
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5wwq
RMSD bond length0.005
RMSD bond angle0.925
Data reduction softwareHKL-3000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.540
High resolution limit [Å]2.5006.7802.500
Rmerge0.1090.0760.334
Rmeas0.1180.0820.370
Rpim0.0440.0310.155
Number of reflections2607613981019
<I/σ(I)>6.9
Completeness [%]91.99870.7
Redundancy6.67.24.9
CC(1/2)0.9920.910
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP286magnesium acetate, cacodylate trihydrate, PEG8000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon