5ZSS
L-Cysteine-PLP reaction intermediate of NifS from Hydrogenimonas thermophila
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-24 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1 |
Spacegroup name | P 65 |
Unit cell lengths | 138.200, 138.200, 99.100 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.782 - 3.170 |
R-factor | 0.1904 |
Rwork | 0.188 |
R-free | 0.23790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1eg5 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.782 | 45.782 | 3.270 |
High resolution limit [Å] | 3.170 | 10.000 | 3.170 |
Rmerge | 0.176 | 0.031 | 0.977 |
Rmeas | 0.193 | 0.034 | 1.073 |
Total number of observations | 210918 | ||
Number of reflections | 18389 | 1122 | 3194 |
<I/σ(I)> | 11.86 | 46.78 | 2.21 |
Completeness [%] | 100.0 | 99.2 | 99.8 |
Redundancy | 5.873 | 5.7 | 5.874 |
CC(1/2) | 0.992 | 0.999 | 0.808 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.2M Magnesium chloride, 0.1M Tris-HCl, 20% (w/v) PEG 8000 |