Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ZRY

Crystal Structure of EphA6/Odin Complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyCCD
Collection date2015-01-14
DetectorADSC QUANTUM 315r
Wavelength(s)0.97915
Spacegroup nameP 21 21 21
Unit cell lengths38.985, 85.042, 98.383
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 1.300
R-factor0.1703
Rwork0.170
R-free0.19870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3kka 2lmr
RMSD bond length0.010
RMSD bond angle1.523
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0189)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.320
High resolution limit [Å]1.3003.5301.300
Rmerge0.0540.0350.903
Rmeas0.0590.0390.987
Rpim0.0240.0170.390
Number of reflections7939838023792
<I/σ(I)>11.5
Completeness [%]97.88795.1
Redundancy5.95.45.7
CC(1/2)0.9970.785
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION7.52890.1M HEPES sodium pH 7.5, 1.5M lithium sulfate monohydrate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon