5ZQ0
Crystal structure of spRlmCD with U747loop RNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9778 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.412, 95.809, 114.208 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.000 |
R-factor | 0.1746 |
Rwork | 0.173 |
R-free | 0.20440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xj1 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.359 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.030 |
High resolution limit [Å] | 2.000 | 5.430 | 2.000 |
Rmerge | 0.080 | 0.040 | 0.477 |
Rmeas | 0.083 | 0.042 | 0.499 |
Rpim | 0.024 | 0.012 | 0.143 |
Number of reflections | 35944 | 1986 | 1767 |
<I/σ(I)> | 4.9 | ||
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 11.9 | 10.8 | 12.1 |
CC(1/2) | 0.999 | 0.952 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M HEPES, pH 7.5, 36%(w/v) PEG600 |