5ZNQ
Crystal structure of APRT from Y. pseudotuberculosis with bound adenine (P21 space group).
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-29 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 48.685, 86.770, 48.688 |
Unit cell angles | 90.00, 104.83, 90.00 |
Refinement procedure
Resolution | 28.830 - 1.750 |
R-factor | 0.166 |
Rwork | 0.164 |
R-free | 0.20290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4mb6 |
RMSD bond length | 0.017 |
RMSD bond angle | 1.871 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.780 |
High resolution limit [Å] | 1.750 | 4.750 | 1.750 |
Rmerge | 0.050 | 0.034 | 0.420 |
Rmeas | 0.058 | 0.039 | 0.483 |
Rpim | 0.028 | 0.019 | 0.234 |
Number of reflections | 39740 | 2060 | 1987 |
<I/σ(I)> | 12.9 | ||
Completeness [%] | 98.3 | 98.5 | 99.5 |
Redundancy | 4 | 4.1 | 4 |
CC(1/2) | 0.996 | 0.783 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 30% PEG3350, 0.1M Tris-Hcl pH 8.5, 0.2M Sodium Acetate with 5mM adenine and 5% ethylene glycol |