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5ZNH

Catechol 2,3-dioxygenase with 4-methyl catechol from Diaphorobacter sp DS2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
Collection date2018-03-10
DetectorADSC QUANTUM 315r
Wavelength(s)1.0053
Spacegroup nameP 62 2 2
Unit cell lengths101.894, 101.894, 114.369
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution47.989 - 2.400
R-factor0.2009
Rwork0.199
R-free0.23930
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3hq0
Data reduction softwareXDS
Data scaling softwareAimless (0.6.2)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.99047.9902.490
High resolution limit [Å]2.4008.9802.400
Rmerge0.0700.0370.674
Rmeas0.0740.0390.709
Rpim0.0230.0120.215
Total number of observations145849274315486
Number of reflections143023431467
<I/σ(I)>22.452.63.7
Completeness [%]100.099.5100
Redundancy10.2810.6
CC(1/2)0.9960.9990.897
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5291.430% v/v PEG, 0.1M HEPES sodium salt pH 7.5, 0.2M Magnesium chloride

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PDB entries from 2024-05-15

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