5ZLE
Human duodenal cytochrome b (Dcytb) in substrate free form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-22 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.00 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 64.450, 115.940, 48.430 |
Unit cell angles | 90.00, 118.45, 90.00 |
Refinement procedure
Resolution | 42.935 - 2.600 |
R-factor | 0.1991 |
Rwork | 0.197 |
R-free | 0.24580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4o7g |
RMSD bond length | 0.008 |
RMSD bond angle | 1.170 |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.935 | 42.935 | 2.760 |
High resolution limit [Å] | 2.600 | 7.780 | 2.600 |
Rmerge | 0.010 | 0.200 | 7.700 |
Rmeas | 0.010 | 0.201 | 7.755 |
Number of reflections | 9644 | 376 | 1575 |
<I/σ(I)> | 9.96 | 47.81 | 1.06 |
Completeness [%] | 99.3 | 97.9 | 99.3 |
Redundancy | 72.377 | 79.995 | 68.717 |
CC(1/2) | 0.986 | 0.999 | 0.688 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 6.5 | 293 | 20%(v/v) Jeffamine ED-2003, 0.1 M HEPES |