5ZL1
Hexameric structure of copper-containing nitrite reductase of an anammox organism KSU-1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-05-13 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.0 |
Spacegroup name | H 3 2 |
Unit cell lengths | 270.217, 270.217, 128.909 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.000 - 3.200 |
R-factor | 0.241 |
Rwork | 0.240 |
R-free | 0.25370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1kbw |
RMSD bond length | 0.008 |
RMSD bond angle | 1.372 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.260 |
High resolution limit [Å] | 3.200 | 8.670 | 3.200 |
Rmerge | 0.124 | 0.040 | 0.569 |
Rmeas | 0.130 | 0.042 | 0.596 |
Rpim | 0.038 | 0.013 | 0.176 |
Number of reflections | 29860 | 1565 | 1482 |
<I/σ(I)> | 7.4 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 11.5 | 11 | 11.5 |
CC(1/2) | 0.999 | 0.933 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 100mM Tris-HCl, 500mM lithium sulfate, 4% PEG 4000 (pH8.5) |