Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ZL1

Hexameric structure of copper-containing nitrite reductase of an anammox organism KSU-1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL26B1
Synchrotron siteSPring-8
BeamlineBL26B1
Temperature [K]100
Detector technologyCCD
Collection date2015-05-13
DetectorRAYONIX MX225HE
Wavelength(s)1.0
Spacegroup nameH 3 2
Unit cell lengths270.217, 270.217, 128.909
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution40.000 - 3.200
R-factor0.241
Rwork0.240
R-free0.25370
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1kbw
RMSD bond length0.008
RMSD bond angle1.372
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0003.260
High resolution limit [Å]3.2008.6703.200
Rmerge0.1240.0400.569
Rmeas0.1300.0420.596
Rpim0.0380.0130.176
Number of reflections2986015651482
<I/σ(I)>7.4
Completeness [%]100.0100100
Redundancy11.51111.5
CC(1/2)0.9990.933
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP277100mM Tris-HCl, 500mM lithium sulfate, 4% PEG 4000 (pH8.5)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon