5ZK6
Crystal structure of RimK complexed with RpsF
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-04 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.000000 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 131.272, 131.272, 168.571 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.969 - 3.150 |
R-factor | 0.2095 |
Rwork | 0.208 |
R-free | 0.24490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5zct |
RMSD bond length | 0.007 |
RMSD bond angle | 1.155 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.17) |
Phasing software | PHASER (2.8.0) |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.130 | 47.130 | 3.360 |
High resolution limit [Å] | 3.150 | 8.900 | 3.150 |
Rmerge | 0.167 | 0.037 | 2.942 |
Rmeas | 0.170 | 0.037 | 2.981 |
Rpim | 0.028 | 0.007 | 0.478 |
Number of reflections | 15497 | 793 | 2724 |
<I/σ(I)> | 19.9 | ||
Completeness [%] | 99.9 | 99.3 | 99.6 |
Redundancy | 37.7 | 29.3 | 38.2 |
CC(1/2) | 1.000 | 1.000 | 0.926 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 100mM Tris-HCl (pH 7.8), 600mM Sodium formate, 8% Poly-gamma-glutamic acid 200-400 |