5ZJA
human D-amino acid oxidase complexed with 5-chlorothiophene-2-carboxylic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-27 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 150.294, 182.641, 51.121 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.229 - 2.600 |
R-factor | 0.2038 |
Rwork | 0.201 |
R-free | 0.25980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2du8 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.884 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.230 | 2.700 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.197 | 1.786 |
Rpim | 0.108 | 0.983 |
Number of reflections | 44404 | 4593 |
<I/σ(I)> | 9.7 | |
Completeness [%] | 100.0 | |
Redundancy | 8.2 | |
CC(1/2) | 0.996 | 0.517 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 15%(w/v) PEG 4000, 0.2M ammonium acetate, 0.1M Na citrate at pH 8.0, and 10%(v/v) glycerol |