5ZH1
Crystal structure of NDM-1 at pH7.5 (Imidazole) with 2 molecules per asymmetric unit
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL17U1 |
| Synchrotron site | SSRF |
| Beamline | BL17U1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2012-07-05 |
| Detector | ADSC QUANTUM 315r |
| Wavelength(s) | 0.93924 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 40.540, 73.619, 66.055 |
| Unit cell angles | 90.00, 97.88, 90.00 |
Refinement procedure
| Resolution | 32.750 - 1.050 |
| R-factor | 0.1277 |
| Rwork | 0.127 |
| R-free | 0.14650 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3Q6X |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.247 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 1.090 |
| High resolution limit [Å] | 1.050 | 2.260 | 1.050 |
| Rmerge | 0.065 | 0.044 | 0.495 |
| Total number of observations | 1268191 | ||
| Number of reflections | 168917 | 17325 | 16230 |
| <I/σ(I)> | 10.1 | ||
| Completeness [%] | 94.8 | 96 | 91.7 |
| Redundancy | 7.5 | 7.5 | 7.5 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 295 | 0.1M imidazole pH7.5, 20% PEG 3350 |






