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5ZGU

Crystal structure of NDM-1 at pH7.0 (HEPES) with 2 molecules per asymmetric unit

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyCCD
Collection date2011-06-10
DetectorADSC QUANTUM 315r
Wavelength(s)0.97922
Spacegroup nameP 1 21 1
Unit cell lengths40.762, 73.496, 66.448
Unit cell angles90.00, 98.13, 90.00
Refinement procedure
Resolution50.000 - 1.550
R-factor0.1199
Rwork0.118
R-free0.15790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3Q6X
RMSD bond length0.009
RMSD bond angle1.429
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0189)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.610
High resolution limit [Å]1.5503.3401.550
Rmerge0.0690.0380.441
Number of reflections5512757255344
<I/σ(I)>8.2
Completeness [%]97.599.595.7
Redundancy3.73.83.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72950.1M HEPES pH7.0, 25% PEG 3350

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