5ZGA
Crystal Structure of Triosephosphate isomerase SAD deletion and N115A mutant from Opisthorchis viverrini
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 11C |
Synchrotron site | PAL/PLS |
Beamline | 11C |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2016-09-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97942 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 74.040, 92.555, 76.075 |
Unit cell angles | 90.00, 109.39, 90.00 |
Refinement procedure
Resolution | 46.278 - 1.793 |
R-factor | 0.1474 |
Rwork | 0.147 |
R-free | 0.18100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5zfx |
RMSD bond length | 0.009 |
RMSD bond angle | 1.104 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.830 |
High resolution limit [Å] | 1.800 | 4.880 | 1.800 |
Rmerge | 0.091 | 0.095 | 0.273 |
Rmeas | 0.100 | 0.105 | 0.310 |
Rpim | 0.040 | 0.043 | 0.143 |
Total number of observations | 464383 | ||
Number of reflections | 87968 | 4506 | 4271 |
<I/σ(I)> | 9.6 | ||
Completeness [%] | 97.2 | 97.1 | 95.1 |
Redundancy | 5.3 | 5.8 | 4 |
CC(1/2) | 0.994 | 0.850 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 8.5 | 293 | PEG 3350 |