5ZFS
Crystal structure of Arthrobacter globiformis M30 sugar epimerase which can produce D-allulose from D-fructose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-27 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 103.980, 103.980, 256.530 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.020 - 1.960 |
R-factor | 0.1869 |
Rwork | 0.186 |
R-free | 0.21110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3vyl |
RMSD bond length | 0.004 |
RMSD bond angle | 0.718 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.020 | 45.020 | 2.010 |
High resolution limit [Å] | 1.960 | 8.770 | 1.960 |
Rmerge | 0.078 | 0.039 | 0.330 |
Rmeas | 0.080 | 0.040 | 0.369 |
Total number of observations | 1334865 | ||
Number of reflections | 59179 | 826 | 3946 |
<I/σ(I)> | 31.46 | 62.41 | 4.59 |
Completeness [%] | 99.0 | 98.5 | 91.5 |
Redundancy | 22.556 | 24.331 | 4.652 |
CC(1/2) | 0.999 | 0.998 | 0.908 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 293 | AMMONIUM ACETATE, SODIUM ACETATE TRIHYDRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K |