5ZFR
Crystal structure of PilB, an extension ATPase motor of Type IV pilus, from Geobacter sulfurreducens
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0723 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 176.301, 176.301, 138.561 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.338 - 3.100 |
R-factor | 0.2192 |
Rwork | 0.218 |
R-free | 0.24730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5tsg |
Data reduction software | iMOSFLM (7.2.1) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 176.301 | 46.338 | 3.270 |
High resolution limit [Å] | 3.100 | 9.800 | 3.100 |
Rmerge | 0.035 | 1.308 | |
Rmeas | 0.126 | 0.038 | 1.401 |
Rpim | 0.044 | 0.013 | 0.485 |
Number of reflections | 39383 | 1342 | 5711 |
<I/σ(I)> | 10.8 | 15.5 | 0.6 |
Completeness [%] | 98.4 | 95.7 | 99.4 |
Redundancy | 7.7 | 6.7 | 8.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 1M succinic acid pH 7.0, 0.1M HEPES pH 7.0, 1%(w/v) Polyethylene glycol monomethyl ether 2000 |