5ZFP
Structure of the ExbB/ExbD hexameric complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 90 |
Detector technology | PIXEL |
Collection date | 2016-10-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 121.470, 106.340, 163.360 |
Unit cell angles | 90.00, 111.75, 90.00 |
Refinement procedure
Resolution | 50.180 - 2.840 |
R-factor | 0.247 |
Rwork | 0.245 |
R-free | 0.28800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5sv0 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.110 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.180 | 2.940 |
High resolution limit [Å] | 2.840 | 2.840 |
Rmerge | 0.110 | 0.500 |
Rmeas | 0.155 | 0.706 |
Number of reflections | 90711 | |
<I/σ(I)> | 6.67 | |
Completeness [%] | 99.3 | |
Redundancy | 5 | |
CC(1/2) | 0.992 | 0.751 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 293 | 0.1 M glycine, pH 9.0, 0.15 M CaCl2, 40 % PEG 350 MME, 0.05-0.2 M L-arginine |