Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ZFP

Structure of the ExbB/ExbD hexameric complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]90
Detector technologyPIXEL
Collection date2016-10-20
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1
Spacegroup nameP 1 21 1
Unit cell lengths121.470, 106.340, 163.360
Unit cell angles90.00, 111.75, 90.00
Refinement procedure
Resolution50.180 - 2.840
R-factor0.247
Rwork0.245
R-free0.28800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5sv0
RMSD bond length0.010
RMSD bond angle1.110
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.3)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.1802.940
High resolution limit [Å]2.8402.840
Rmerge0.1100.500
Rmeas0.1550.706
Number of reflections90711
<I/σ(I)>6.67
Completeness [%]99.3
Redundancy5
CC(1/2)0.9920.751
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP92930.1 M glycine, pH 9.0, 0.15 M CaCl2, 40 % PEG 350 MME, 0.05-0.2 M L-arginine

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon