5Z6P
The crystal structure of an agarase, AgWH50C
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL19U1 |
| Synchrotron site | SSRF |
| Beamline | BL19U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-07-08 |
| Detector | DECTRIS PILATUS3 S 6M |
| Wavelength(s) | 0.97853 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 215.801, 93.647, 85.049 |
| Unit cell angles | 90.00, 105.66, 90.00 |
Refinement procedure
| Resolution | 46.824 - 2.061 |
| R-factor | 0.1976 |
| Rwork | 0.195 |
| R-free | 0.24480 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4bq2 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.116 |
| Data reduction software | HKL-3000 |
| Data scaling software | HKL-3000 |
| Phasing software | PHENIX (1.10.1) |
| Refinement software | PHENIX (1.8.3_1479) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.090 |
| High resolution limit [Å] | 2.050 | 2.050 |
| Rmerge | 0.101 | 0.594 |
| Number of reflections | 98307 | 4283 |
| <I/σ(I)> | 23.2 | |
| Completeness [%] | 98.3 | 87.1 |
| Redundancy | 6.6 | 5.2 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | EVAPORATION | 7.5 | 291 | 0.2M Na iodide, 0.1M Bis Tris propane, pH 7.5, 20% PEG 3350 |
