5Z3J
Crystal Structure of Abrin A chain (Recombinant) in complex with Nicotinamide at 1.7 Angstroms
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER AXS MICROSTAR-H |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-02-28 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.660, 74.080, 82.480 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.656 - 1.700 |
R-factor | 0.2009 |
Rwork | 0.200 |
R-free | 0.22230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1abr |
RMSD bond length | 0.003 |
RMSD bond angle | 0.536 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 23.660 | 23.660 | 1.730 |
High resolution limit [Å] | 1.700 | 9.000 | 1.700 |
Rmerge | 0.054 | 0.041 | 0.666 |
Rmeas | 0.059 | 0.046 | 0.726 |
Rpim | 0.023 | 0.020 | 0.283 |
Number of reflections | 26038 | 233 | 1530 |
<I/σ(I)> | 22.6 | ||
Completeness [%] | 90.1 | 95.5 | 100 |
Redundancy | 6.8 | 5.8 | 6.7 |
CC(1/2) | 0.998 | 0.992 | 0.805 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.5 | 295.15 | 20% PEG 8000, 0.2M Magnesium Chloride, Tris pH 6.5 |