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5YR5

Human methionine aminopeptidase type 1b (F309L mutant) in complex with Ovalicin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2017-03-19
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54
Spacegroup nameP 1 21 1
Unit cell lengths47.392, 77.339, 47.464
Unit cell angles90.00, 87.95, 90.00
Refinement procedure
Resolution31.240 - 1.600
R-factor0.1782
Rwork0.177
R-free0.20120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2gz5
RMSD bond length0.013
RMSD bond angle1.726
Data reduction softwareDENZO (2.3.1)
Data scaling softwareSCALEPACK (2.2.0)
Phasing softwareMOLREP (11.5.05)
Refinement softwareREFMAC (5.8.0230)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.660
High resolution limit [Å]1.6003.4501.600
Rmerge0.0560.0360.427
Rmeas0.0650.0420.514
Rpim0.0340.0220.280
Number of reflections4524146154450
<I/σ(I)>17.3
Completeness [%]99.899.898.1
Redundancy3.63.73.3
CC(1/2)0.9980.844
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.22980.1M Bistris pH-6.2, 19% PEG3350, 5% glycerol

229380

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