5YQ4
Crystal structure of kelch domain of KLHL20
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-28 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 49.957, 74.203, 155.222 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 1.580 |
R-factor | 0.1646 |
Rwork | 0.163 |
R-free | 0.19140 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.024 |
RMSD bond angle | 2.205 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | BALBES |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 1.640 |
High resolution limit [Å] | 1.580 | 3.400 | 1.580 |
Rmerge | 0.049 | 0.028 | 0.236 |
Rmeas | 0.052 | 0.029 | 0.251 |
Rpim | 0.017 | 0.009 | 0.084 |
Total number of observations | 384030 | ||
Number of reflections | 40146 | 4221 | 3937 |
<I/σ(I)> | 12.4 | ||
Completeness [%] | 99.9 | 99.8 | 99.5 |
Redundancy | 9.6 | 9.4 | 8.6 |
CC(1/2) | 0.998 | 0.985 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 283 | 0.1 M Sodium Citrate, pH 5, 20% PEG 6000 |