5YPZ
Crystal structure of minor pilin CofB from CFA/III complexed with N-terminal peptide fragment of CofJ
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SPRING-8 BEAMLINE BL26B1 |
| Synchrotron site | SPring-8 |
| Beamline | BL26B1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2014-10-29 |
| Detector | RIGAKU SATURN A200 |
| Wavelength(s) | 1.000 |
| Spacegroup name | P 65 |
| Unit cell lengths | 157.216, 157.216, 118.132 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 54.187 - 3.521 |
| R-factor | 0.1958 |
| Rwork | 0.192 |
| R-free | 0.23160 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5ax6 |
| RMSD bond length | 0.004 |
| RMSD bond angle | 0.777 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 60.000 | 60.000 | 3.580 |
| High resolution limit [Å] | 3.520 | 9.540 | 3.520 |
| Rmerge | 0.290 | 0.064 | 1.863 |
| Rmeas | 0.304 | 0.067 | 1.958 |
| Rpim | 0.091 | 0.021 | 0.601 |
| Total number of observations | 229612 | ||
| Number of reflections | 20699 | 1077 | 1035 |
| <I/σ(I)> | 4.7 | ||
| Completeness [%] | 100.0 | 99.7 | 100 |
| Redundancy | 11.1 | 10.6 | 10.6 |
| CC(1/2) | 0.998 | 0.500 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293 | 100mM CAPS pH 10.5, 20% PEG8000, 200mM NaCl |
