5YJY

Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with AC0-12.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SPRING-8 BEAMLINE BL44XU
Synchrotron site	SPring-8
Beamline	BL44XU
Temperature [K]	100
Detector technology	CCD
Collection date	2014-06-28
Detector	RAYONIX MX300HE
Wavelength(s)	0.90000
Spacegroup name	P 21 21 21
Unit cell lengths	69.854, 115.795, 166.499
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	20.000 - 3.400
R-factor	0.2118
Rwork	0.207
R-free	0.29865
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	4g9k
RMSD bond length	0.011
RMSD bond angle	1.609
Data reduction software	HKL-2000
Data scaling software	HKL-2000
Phasing software	MOLREP
Refinement software	REFMAC (5.7.0029)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	50.000	3.460
High resolution limit [Å]	3.400	3.400
Rmerge	0.095	0.773
Number of reflections	18371
<I/σ(I)>	7.9	1.3
Completeness [%]	97.3	98.6
Redundancy	4.9	4.7

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	6	293	50mM Mes(pH 6.0), 34%(v/v) PEG 400, 100mM NaCl, 2%(v/v) ethylene glycol, 5%(v/v) glycerol