Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YEP

Crystal structure of SO_3166-SO_3165 from Shewanella oneidensis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2017-04-10
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.9788
Spacegroup nameP 21 21 2
Unit cell lengths56.610, 224.380, 53.310
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.150 - 3.000
R-factor0.2686
Rwork0.267
R-free0.29680
Structure solution methodSAD
RMSD bond length0.002
RMSD bond angle0.547
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareSHELXCD
Refinement softwarePHENIX ((1.10.1_2155))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.080
High resolution limit [Å]3.0003.000
Rmerge0.0650.648
Rmeas0.694
Number of reflections142731904
<I/σ(I)>13.933.51
Completeness [%]99.9100
Redundancy7.67.8
CC(1/2)0.9990.949
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION2930.1 M Bicine (pH 8.6), 14% PEG6000 and 8% Ethlene glycol

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon